EcoSP (E.coli Surface Polysaccharide) database is an integrated repository of bacterial O-antigens and K-antigens (Escherichia coli) , which collects comprehensive information, including serotypes, and coding region sequences,glycosyltransferases, structures and biosynthetic pathways of K-/O- antigens.
ANTIGENS
There are the lists of all published O-antigens or K antigens, displaying information including the related E. coli strains, the structure (the SPNG, chemical representation with related glycosyltransferases and CSDB test formats) and the synthesis gene cluster of each antigen.
SEARCH
Advanced search provides the queries: the E. coli strain (strain name or genbank accession number), and the serotype.
GLYCOSYLTRANSFERSE
You can search the sugars, glycosidic bonds or the glycosyltransferases for more information, such as the related accepter sugars, the donor sugars, the glycosidic bonds and the enzymes.
PATHWAY
There are all published syntheses pathway of the sugars in the structure of antigens, and all the pathway information including O serotypes, the related strains the key genes in sugar synthesis and the steps of synthesis by searching the sugars.
ANALYSIS
The E. coli genome sequence can be submitted for serotype prediction and glycosyltransferases annotation, and the bacterial sequence can be submitted for just glycosyl transferase prediction.
Update logs
[2024-11-15] Add the search page of glycoside hydrolases infomation.
[2024-10-15] Testing the glycoside hydrolases analysis page.
[2024-10-14] Add the glycoside hydrolases analysis page.
[2024-09-20] Write the script of glycoside hydrolases annotation for genomes or proteins.
[2024-08-26] Collect information for EC 3.2.1.*.
[2023-12-05] Rename Synthesis page name to In-silico synthesis page.
[2023-11-21] Add the Synthesis page.
[2023-10-25] Manually update and integrate glycosyltransferase and reaction information.
[2023-09-28] Add dbCAN4 predict results in analysis results.
[2023-09-22] Use dbCAN4 for carbohydrate-active enzyme (CAZyme) sequence and annotation of database.
[2023-06-08] Modify the content displayed in multiple genomes Report page.
[2023-06-07] Add tips content in Analysis page.
[2023-06-07] Modify the Analysis page to allow multiple genomes to be uploaded.
[2022-11-01] Modify the home page and add the flow chart and map.
[2022-03-05] Adjust the style structure of the pathway and analysis pages
[2021-09-08] Release all pages of this website.
[2021-08-09] Modify the analysis programs and display style of analysis results.
[2021-06-08] Release and modify the pathway page , modify the table style.
[2021-05-05] Modify the content displayed in search results page.
[2021-04-23] Release the website for the first time.